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acelab:namd [2015/09/02 12:01]
mcawood
acelab:namd [2015/09/02 12:05] (current)
mcawood
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 The code is shipped as a compiled binary, which has proven sufficient for testing. ​ There are two versions available below; for x86 processors, as well as for CUDA enabled GPUs. The code is shipped as a compiled binary, which has proven sufficient for testing. ​ There are two versions available below; for x86 processors, as well as for CUDA enabled GPUs.
  
-x86 version: ​[[FileNAMD_2.10_Linux-x86_64-ibverbs-smp.tar.gz]] \\ +x86 version: ​{{http://wiki.chpc.ac.za/​_media/​acelab:​namd_2.10_linux-x86_64-ibverbs-smp.tar.gz|namd_2.10_linux-x86_64-ibverbs-smp.tar.gz}} ​\\ 
-CUDA version: ​[[FileNAMD_2.10_Linux-x86_64-ibverbs-smp-CUDA.tar.gz]]+CUDA version: ​{{http://wiki.chpc.ac.za/​_media/​acelab:​namd_2.10_linux-x86_64-ibverbs-smp-cuda.tar.gz|namd_2.10_linux-x86_64-ibverbs-smp-cuda.tar.gz}}
  
 Download the two tars into the current directory. Download the two tars into the current directory.
  
-  tar -xf NAMD_2.10_Linux-x86_64-ibverbs-smp.tar.gz ​<br>+  tar -xf NAMD_2.10_Linux-x86_64-ibverbs-smp.tar.gz ​
   tar -xf NAMD_2.10_Linux-x86_64-ibverbs-smp-CUDA.tar.gz   tar -xf NAMD_2.10_Linux-x86_64-ibverbs-smp-CUDA.tar.gz
  
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 There are two benchmarks setup for NAMD, which will work with both the CUDA and x86 versions. There are two benchmarks setup for NAMD, which will work with both the CUDA and x86 versions.
-The smaller test case is the apoa1 benchmark, with 2500 timesteps and 250 step output frequency: ​[[FileApoa1.tar.gz]] <br> +The smaller test case is the apoa1 benchmark, with 2500 timesteps and 250 step output frequency: ​{{http://​wiki.chpc.ac.za/​_media/​acelab:​apoa1.tar.gz|apoa1.tar.gz}} \\ 
-The larger test case is the STMV benchmark, with 1500 timesteps and 500 step output frequency: ​[[FileStmv.tar.gz]]+The larger test case is the STMV benchmark, with 1500 timesteps and 500 step output frequency: ​{{http://​wiki.chpc.ac.za/​_media/​acelab:​stmv.tar.gz|stmv.tar.gz}}
  
 NOTE: the benchmark calculates a once off FFT based on the number of cores used, so each test should be run twice to avoid this overhead. NOTE: the benchmark calculates a once off FFT based on the number of cores used, so each test should be run twice to avoid this overhead.
/var/www/wiki/data/attic/acelab/namd.1441188064.txt.gz · Last modified: 2015/09/02 12:01 by mcawood