howto:java
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision | Last revision Both sides next revision | ||
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howto:java [2015/10/23 15:16] ccrosby |
howto:java [2016/06/17 10:47] dane |
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| Line 41: | Line 41: | ||
| <file bash java_test.qsub> | <file bash java_test.qsub> | ||
| #!/bin/bash | #!/bin/bash | ||
| - | #PBS -l select=2:ncpus=8:mpiprocs=8 | + | #PBS -l select=2:ncpus=24:mpiprocs=24 |
| #PBS -l walltime=00:01:00 | #PBS -l walltime=00:01:00 | ||
| - | #PBS -q netboot | + | #PBS -q normal |
| + | #PBS -P SHORTNAME | ||
| #PBS -M YOUREMAILADDRESS | #PBS -M YOUREMAILADDRESS | ||
| #PBS -m be | #PBS -m be | ||
| - | #PBS -V | + | #PBS -e /mnt/lustre/users/USERNAME/java_test/std_err.txt |
| - | #PBS -e /lustre/SCRATCH5/users/USERNAME/java_test/std_err.txt | + | #PBS -o /mnt/lustre/users/USERNAME/java_test/std_out.txt |
| - | #PBS -o /lustre/SCRATCH5/users/USERNAME/java_test/std_out.txt | + | |
| #PBS -N JAVA_TEST | #PBS -N JAVA_TEST | ||
| - | #PBS -mb | ||
| - | MODULEPATH=/opt/gridware/bioinformatics/modules:$MODULEPATH | + | module add chpc/openmpi/1.10.3/gcc-5.1.0_java-1.8.0_73 |
| - | source /etc/profile.d/modules.sh | + | |
| - | + | ||
| - | module add openmpi/openmpi-1.10.0_gcc-4.7.2 | + | |
| NP=`cat ${PBS_NODEFILE} | wc -l` | NP=`cat ${PBS_NODEFILE} | wc -l` | ||
| - | cd /lustre/SCRATCH5/users/USERNAME/java_test | + | cd /mnt/lustre/users/USERNAME/java_test |
| mpirun -np ${NP} -machinefile ${PBS_NODEFILE} java Hello | mpirun -np ${NP} -machinefile ${PBS_NODEFILE} java Hello | ||
| </file> | </file> | ||
/var/www/wiki/data/pages/howto/java.txt · Last modified: 2016/06/17 10:48 by dane
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