You need to ensure that the relevant LAMMPS files are in the directory were you wish to submit your job from. Run qlammps in order to generate a PBS script and submit a job to the cluster. Examples of the script are provided below:
Examples of input required for these scripts are provided below.
EXAMPLE1 Enter project name/shortname CHEM0100 Enter input file (with extension) test.lj Enter number of nodes on which to run job 1 Enter total walltime (hour:minute) 2:00 Enter email address testing@gmail.com Generated pbs file for test Do you wish to submit job to cluster (y/n) y
EXAMPLE2 [PLEASE TAKE NOTE OF EMPTY SPACES] Enter project name/shortname CHEM0100 Enter input file (with extension) test.lj Enter number of nodes on which to run job Enter total walltime (hour:minute) Enter email address testing@gmail.com Generated pbs file for test Do you wish to submit job to cluster (y/n) y