#!/bin/bash
#PBS -e /mnt/lustre/users/USERNAME/test_scripts/gnu_parallel.stderr.out
#PBS -o /mnt/lustre/users/USERNAME/test_scripts/gnu_parallel.stdout.out
#PBS -V
#PBS -P PROGRAMMESHORTNAME
#PBS -M youremailaddress
#PBS -l select=2:ncpus=24:nodetype=haswell_reg
#PBS -l walltime=00:01:00
#PBS -q normal
#PBS -m be
#PBS -r n
#PBS -mb


module add chpc/BIOMODULES
module add gnu-parallel

WORKING_DIR=/mnt/lustre/users/USERNAME/test_scripts
echo "Hello World! Main gnu parallel test thingy running here"

cd ${WORKING_DIR}

ls ${WORKING_DIR}/gnup_scripts/* | parallel -M --sshdelay 0.2 -j 6 -u --sshloginfile ${PBS_NODEFILE} "cd ${WORKING_DIR}/gnup_scripts; {} {}"