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guide:compiling [2014/02/10 17:59]
ischeepers [MPI] 		guide:compiling [2021/12/09 16:42] (current)
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 ======Compiling====== ======Compiling======
 =====Compilers===== =====Compilers=====
-The following is a list of C, C++ and Fortran compilers available on the SUN cluster and the M9000:+The following is a list of C, C++ and Fortran compilers available on the CHPC cluster:
 ====Intel==== ====Intel====
   * ''icc'' (for C and C++)   * ''icc'' (for C and C++)
   * ''ifort''   * ''ifort''
-====GNU====+====GNU Compiler Collection====
   * ''gcc''   * ''gcc''
   * ''g++''   * ''g++''
   * ''gfortran''   * ''gfortran''
- 
-<del>Sun Studio</del> 
-  * ''cc'' 
-  * ''CC'' 
-  * ''f90''/''f95'' 
  
 =====Environment===== =====Environment=====
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   * Remove a module from the environment <code>module remove <module></code> or <code>module rm <module></code>   * Remove a module from the environment <code>module remove <module></code> or <code>module rm <module></code>
  
-To execute multiple module commands from a file (eg. a shell script), create a shell script, e.g.: 
-<code>#!/bin/bash -l 
  
-module load dell/moab_7.1.3_batch 
-module load dell/torque/4.2.2_batch 
- 
-module list</code> 
- 
-This script has to be loaded via the "source" command:  <code>source module_loader.sh</code>  
 =====Compiling===== =====Compiling=====
 ====Example Code==== ====Example Code====
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 ===Fortran=== ===Fortran===
 <code>gfortran -o hello hello.f90</code> <code>gfortran -o hello hello.f90</code>
-====Sun Studio==== 
-The following code snippets demonstrate how to compile the above code examples use the Sun Studio compiler suite: 
-===C=== 
-<code>cc -fast -o hello hello.c</code> 
-===Fortran=== 
-<code>f90 -fast -o hello hello.f90</code> 
  
 =====OpenMP===== =====OpenMP=====
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 <code>ifort -openmp omp_hello.f -o hello</code> <code>ifort -openmp omp_hello.f -o hello</code>
  
 +===Java===
 +
 +An example of compiling and executing a simple Java program:
 +====MyFirstJavaProgram.java====
 +<code> 
 +public class MyFirstJavaProgram {
 +  public static void main(String []args) {
 +    System.out.println("Hello World"); // prints Hello World
 +  }
 +}
 +</code>
 +
 +To compile this, make sure you have the java module loaded, then:
 +<code>
 +javac MyFirstJavaProgram.java</code>
 +
 +A bytecode-compiled file should be created, named MyFirstJavaProgram.class
 +
 +To execute it, run as follows:
 +<code>
 +java MyFirstJavaProgram
 +</code>
 =====MPI===== =====MPI=====
 MPI (Message Passing Interface -- [[http://www.open-mpi.org]]) is provided using the OpenMPI libraries.  To compile MPI code use the ''mpicc'' or ''mpif90'' compilers. MPI (Message Passing Interface -- [[http://www.open-mpi.org]]) is provided using the OpenMPI libraries.  To compile MPI code use the ''mpicc'' or ''mpif90'' compilers.
  
 To run an MPI job see the man pages for PBS Pro. On the login node, type "man qsub". To obtain an interactive node, To run an MPI job see the man pages for PBS Pro. On the login node, type "man qsub". To obtain an interactive node,
-use "qsub -I". The login node prevents long-running processes therefore an interactive node is useful for compilations and builds. +use ''qsub -I'' The login node prevents long-running processes therefore an interactive node is useful for compilations and builds. To test your code, load the module you want to use first, and then compile your code with it: 
 + 
 +''$mpicc -o bin/test src/hello_world.c'' 
 + 
 +To test it: 
 + 
 +<code>mpirun -np 8 bin/test</code> 
 + 
 +You should see something similar to: 
 +<code> 
 +Hello world! I'm 7 of 8 on cnode-2-6 
 +Hello world! I'm 6 of 8 on cnode-2-6 
 +Hello world! I'm 5 of 8 on cnode-2-6 
 +Hello world! I'm 1 of 8 on cnode-2-6 
 +Hello world! I'm 0 of 8 on cnode-2-6 
 +Hello world! I'm 3 of 8 on cnode-2-6 
 +Hello world! I'm 2 of 8 on cnode-2-6 
 +Hello world! I'm 4 of 8 on cnode-2-6 
 +</code>
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