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guide:compiling_r

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guide:compiling_r [2011/12/07 15:29]
hamish created 		guide:compiling_r [2021/12/09 16:42] (current)
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 ====== Installing R 2.14 from Source ======  ====== Installing R 2.14 from Source ====== 
  
-This guide is written fun the Sun Tsessbe Cluster, login node. Its recommended that you make you use of temporary or scratch directory to do all the compilation in (i.e. ~/scratch or /tmp/$USER), as to save disk space in your home directory.+This guide is written fun the Sun Tsessbe Cluster, login node. Its recommended that you make you use of temporary or scratch directory to do all the compilation in (i.e. ~/scratch or /tmp/$USER), as to save disk space in your home directory. Note that for this guide, all binary and libraries are installed home directory, i.e prefix=$HOME.
  
-Also note that for this guide, all binary and libraries are installed home directory, i.e prefix=$HOME. Add the following lines to the end of your .bashrc file+If you dont have GCC installed in your home directory, Add the following lines to the end of your .bashrc file
   export PATH=/opt/gridware/gcc-4.3/bin:$PATH   export PATH=/opt/gridware/gcc-4.3/bin:$PATH
   export LD_LIBRARY_PATH=/opt/gridware/gcc-4.3/lib64/:/opt/gridware/gcc-4.3/lib/:$HOME/lib   export LD_LIBRARY_PATH=/opt/gridware/gcc-4.3/lib64/:/opt/gridware/gcc-4.3/lib/:$HOME/lib
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   $ gcc --version   $ gcc --version
     gcc (GCC) 4.3.4     gcc (GCC) 4.3.4
 +    
 +===== Download R Source =====
 +  
 +  $ cd ~/scratch
 +  $ wget http://cran.r-project.org/src/base/R-2/R-2.14.0.tar.gz
 +  $ tar -xf R-2.14.0.tar.gz 
 +  $ cd R-2.14.0/
 +  
 +===== Configure =====
 +
 +For a bare-bones installation
 +  $ mkdir BUILD
 +  $ cd BUILD
 +  $ ../configure --prefix=$HOME --without-system-zlib --without-system-xz --without-cairo --without-libpng --without-jpeglib --disable-openmp --disable-largefile --disable-nls
 +  
 +===== Build / Make =====
 +
 +  $ make
 +  
 +if the process is interrupted, try make again to so if the error persists.
 +
 +===== Check =====
 +
 +  $make check
 +  
 +===== Install =====
 +
 +  $ make install  
 +  
 +restore you .bashrc file
 +
 +For you jobs to run on the worker nodes, you may need to copy some shared libraries to your lib directory
 +  $ cd $HOME/lib
 +  $ cp /usr/local/lib/libiconv.so.2 ./
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