howto:palabos
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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howto:palabos [2022/05/13 13:41] ccrosby [Instructions] |
howto:palabos [2022/05/13 14:59] (current) ccrosby [Instructions] |
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| Line 39: | Line 39: | ||
| - Source the OpenFOAM environment | - Source the OpenFOAM environment | ||
| - Load the cmake module | - Load the cmake module | ||
| - | - Run cmake | + | - Run '' |
| - | - Run make | + | - Run '' |
| === Compile script === | === Compile script === | ||
| Line 69: | Line 69: | ||
| To run the example you must change back one directory level to this directory: < | To run the example you must change back one directory level to this directory: < | ||
| + | If you have not run this example before, first uncompress the geometry file: | ||
| + | < | ||
| If your OpenFOAM environment is still valid, you can run your aneurysm example on a single node with the following instruction: | If your OpenFOAM environment is still valid, you can run your aneurysm example on a single node with the following instruction: | ||
| - | < | + | < |
| To run the code as a PBS batch job over several nodes, you can use this script: | To run the code as a PBS batch job over several nodes, you can use this script: | ||
| Line 78: | Line 80: | ||
| # | # | ||
| #PBS -P projectcode | #PBS -P projectcode | ||
| - | #PBS -l select=5: | + | #PBS -l select=5: |
| #PBS -q normal | #PBS -q normal | ||
| #PBS -l walltime=4: | #PBS -l walltime=4: | ||
| Line 97: | Line 99: | ||
| ###Run the code using MPI | ###Run the code using MPI | ||
| exe=aneurysm | exe=aneurysm | ||
| - | mpirun -iface ib0 -np $nproc $exe param.xml | + | mpirun -iface ib0 -np $nproc $exe param.xml > run.out |
| </ | </ | ||
| + | |||
| + | === Post-processing === | ||
| + | Palabos does not come with built-in post-processing tools. | ||
| + | < | ||
| + | chpc/ | ||
| + | chpc/ | ||
| + | </ | ||
| + | |||
| + | Load one of these modules if you need ImageMagick. | ||
| + | |||
| + | VTK files can be displayed with [[https:// | ||
/app/dokuwiki/data/attic/howto/palabos.1652442093.txt.gz · Last modified: 2022/05/13 13:41 by ccrosby
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