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--- research:chisqsurface [2024/03/18 19:56]
msovara created
+++ research:chisqsurface [2024/03/19 15:53] (current)
msovara
@@ Line 1: / Line 1: @@
 ======chisqsurface=====
-chisqsurface (https://github.com/lpgaff/chisqsurface) is written in C++ with ROOT libraries. You will need a compiler that accepts the c++11 standard or greater. ROOT (root.cern.ch) must be installed and directories set correctly (i.e. using thisroot.sh). Further to this, gosia and gosia2 must be installed (with names "gosia" and "gosia2", respectively) and your PATH variable should point to their directory(s). Please check the Makefile and define the BINDIR for your needs.
+At the moment, chisqsurface (https://github.com/lpgaff/chisqsurface) has been installed inside of the ROOT python environment installed using conda. The chisqsurface makefile was edited to include the paths to the ROOT bin and lib directories in the conda environment. Download, compile and run the software as follows:
 <code bash>
-git clone https://github.com/lpgaff/chisqsurface
+$ module purge
-cd chisqsurface
+$ module add chpc/BIOMODULES
+$ git clone https://github.com/lpgaff/chisqsurface
+$ cd chisqsurface
 </code>
-You would have installed ROOT using the conda package manager. Now you need to locate the virtual
+Now edit the first two lines of the Makefile by proving the path to the ROOT bin and lib directories. Query the ROOT bin and lib directories as follows
+<code bash>
+$ echo $CONDA_PREFIX
+$ cd $CONDA_PREFIX
+</code>
+Copy the full paths to the ROOT bin and lib directories and edit them into the first two lines of the Makefile using nano or vim or any text editor of your liking.
+Now run the Makefile to compile the application:
+<code bash>
+$ make
+</code>
+If compilation completes successfully, you then try to initiate the software by typing:
+<code bash>
+$ chisqsurface
+</code>
+Each time you run this software simply activate your ROOT conda environment **root_env** and then launch chisqsurface.

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