wiki.chpc.ac.za

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

======chisqsurface=====

At the moment, chisqsurface (https://github.com/lpgaff/chisqsurface) has been installed inside of the ROOT python environment installed using conda. The chisqsurface makefile was edited to include the paths to the ROOT bin and lib directories in the conda environment. Download, compile and run the software as follows:

<code bash>
$ module purge
$ module add chpc/BIOMODULES
$ git clone https://github.com/lpgaff/chisqsurface
$ cd chisqsurface
</code>

Now edit the first two lines of the Makefile by proving the path to the ROOT bin and lib directories. Query the ROOT bin and lib directories as follows

<code bash>
$ echo $CONDA_PREFIX
$ cd $CONDA_PREFIX
</code>
Copy the full paths to the ROOT bin and lib directories and edit them into the first two lines of the Makefile using nano or vim or any text editor of your liking.

Now run the Makefile to compile the application: 
<code bash>
$ make
</code>

If compilation completes successfully, you then try to initiate the software by typing:

<code bash>
$ chisqsurface
</code>

Each time you run this software simply activate your ROOT conda environment **root_env** and then launch chisqsurface.

wiki.chpc.ac.za

User Tools

Site Tools

Page Tools